-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_336

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61723-T1
Valid prediction for GeneMark_model.107342_t
Couldn't classify 104, 261
Couldn't classify 7836, 7964
Sorry, prediction snap_scaffold_336-snap.1-T1 fails validation.
(GTA)	 AG	104-261	GT	AGG
(TGC)	 AG	1967-2041	GT	TGG
(GCA)	 AG	2158-2245	GT	GGG
(GGA)	 AG	3606-3648	GT	AGG
(GGT)	 AG	4091-4232	GT	AGG
(GGG)	 AG	4791-4877	GT	GGG
(GAC)	 AG	7836-7964	GT	AGG
-recovered snap_scaffold_336-snap.1-T1, internal, 104, 261
-recovered snap_scaffold_336-snap.1-T1, internal, 1967, 2041
-recovered snap_scaffold_336-snap.1-T1, internal, 2158, 2245
-recovered snap_scaffold_336-snap.1-T1, internal, 3606, 3648
-recovered snap_scaffold_336-snap.1-T1, internal, 4091, 4232
-recovered snap_scaffold_336-snap.1-T1, internal, 4791, 4877
-recovered snap_scaffold_336-snap.1-T1, internal, 7836, 7964
Couldn't classify 1, 103
Sorry, prediction Augustus_model.g41027.t1 fails validation.
(CTG)	 CC	1-103	GT	AGG
(GTC)	 AG	849-884	GT	AGG
(ATC)	 AG	1048-1057	GT	AGG
(TCC)	 AG	1394-1424	GT	AGG
(TGC)	 AG	1967-2041	GT	TGG
(GGA)	 AG	3606-3628	TC	AGT
-recovered Augustus_model.g41027.t1, terminal, 3606, 3628
-recovered Augustus_model.g41027.t1, internal, 849, 884
-recovered Augustus_model.g41027.t1, internal, 1048, 1057
-recovered Augustus_model.g41027.t1, internal, 1394, 1424
-recovered Augustus_model.g41027.t1, internal, 1967, 2041

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7925, 7991
Sorry, prediction GeneMark_model.107341_t fails validation.
(ATG)	 AA	6026-6042	GT	AAG
(ACA)	 AG	6136-6231	GT	AGG
(GGC)	 AG	6349-6372	GT	GGG
(ACA)	 AG	6499-6538	GT	GTG
(GGG)	 AG	6560-6642	GT	GGG
(AAC)	 AG	7037-7068	GT	CTG
(CTC)	 AG	7142-7184	GT	AGG
(GAG)	 AG	7210-7218	GT	CCG
(AGC)	 AG	7925-7991	GT	AAG
-recovered GeneMark_model.107341_t, initial, 6026, 6042
-recovered GeneMark_model.107341_t, internal, 6136, 6231
-recovered GeneMark_model.107341_t, internal, 6349, 6372
-recovered GeneMark_model.107341_t, internal, 6499, 6538
-recovered GeneMark_model.107341_t, internal, 6560, 6642
-recovered GeneMark_model.107341_t, internal, 7037, 7068
-recovered GeneMark_model.107341_t, internal, 7142, 7184
-recovered GeneMark_model.107341_t, internal, 7210, 7218
-recovered GeneMark_model.107341_t, internal, 7925, 7991
Valid prediction for snap_scaffold_336-snap.3-T1
Couldn't classify 7142, 7184
Sorry, prediction snap_scaffold_336-snap.2-T1 fails validation.
(ATG)	 AA	1250-1308	GT	CGG
(AGC)	 AG	4222-4255	GT	TGG
(GTG)	 AG	5735-5945	GT	GGG
(GCC)	 AG	6911-7070	GT	GTG
(CTC)	 AG	7142-7184	GT	AGG
-recovered snap_scaffold_336-snap.2-T1, initial, 1250, 1308
-recovered snap_scaffold_336-snap.2-T1, internal, 4222, 4255
-recovered snap_scaffold_336-snap.2-T1, internal, 5735, 5945
-recovered snap_scaffold_336-snap.2-T1, internal, 6911, 7070
-recovered snap_scaffold_336-snap.2-T1, internal, 7142, 7184
Valid prediction for GeneMark_model.107343_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7964, rend_intergenic: 819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8002
-exon list size: 64


building trellis

1.5    
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13.6    
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28.8    
30.3    
31.8    
33.3    
34.8    
36.4    
37.9    
39.4    
40.9    
42.4    
43.9    
45.5    
47.0    
48.5    
50.0    
51.5    
53.0    
54.5    
56.1    
57.6    
59.1    
60.6    
62.1    
63.6    
65.2    
66.7    
68.2    
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71.2    
72.7    
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75.8    
77.3    
78.8    
80.3    
81.8    
83.3    
84.8    
86.4    
87.9    
89.4    
90.9    
92.4    
93.9    
95.5    
97.0    
98.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7964, rend_intergenic: 819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support