-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3357

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 228, 372
Couldn't classify 741, 959
Sorry, prediction snap_scaffold_3357-snap.1-T1 fails validation.
(GTA)	 AG	228-372	GT	CAG
(TTC)	 AG	741-959	GT	AGG
-recovered snap_scaffold_3357-snap.1-T1, internal, 228, 372
-recovered snap_scaffold_3357-snap.1-T1, internal, 741, 959
Valid prediction for GlimmerHMM_glimmerT_63350-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63350-T1 228-384-terminal-1 is invalid.
Couldn't classify 228, 360
Couldn't classify 741, 959
Sorry, prediction Augustus_model.g42327.t1 fails validation.
(GTA)	 AG	228-360	GT	AGG
(TTC)	 AG	741-959	GT	AGG
-recovered Augustus_model.g42327.t1, internal, 228, 360
-recovered Augustus_model.g42327.t1, internal, 741, 959
Couldn't classify 228, 360
Couldn't classify 741, 949
Sorry, prediction GeneMark_model.110974_t fails validation.
(GTA)	 AG	228-360	GT	AGG
(TTC)	 AG	741-949	GT	GAG
-recovered GeneMark_model.110974_t, internal, 228, 360
-recovered GeneMark_model.110974_t, internal, 741, 949

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 100, 183
Sorry, prediction GlimmerHMM_glimmerT_63351-T1 fails validation.
(TTC)	 AG	100-183	GT	TGG
(TCT)	 AG	191-319	CC	GAC
-recovered GlimmerHMM_glimmerT_63351-T1, terminal, 191, 319
-recovered GlimmerHMM_glimmerT_63351-T1, internal, 100, 183
Sorry, intron length (6) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1028
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support