-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3356

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 25, 38
Couldn't classify 710, 786
Sorry, prediction GeneMark_model.110973_t fails validation.
(GGG)	 AG	25-38	GT	AGG
(GGG)	 AG	71-84	GT	AGG
(GGG)	 AG	117-130	GT	AGG
(GGG)	 AG	163-176	GT	AGG
(GGG)	 AG	209-222	GT	AGG
(GGG)	 AG	255-268	GT	AGG
(AGA)	 AG	710-786	GT	GGG
-recovered GeneMark_model.110973_t, internal, 25, 38
-recovered GeneMark_model.110973_t, internal, 71, 84
-recovered GeneMark_model.110973_t, internal, 117, 130
-recovered GeneMark_model.110973_t, internal, 163, 176
-recovered GeneMark_model.110973_t, internal, 209, 222
-recovered GeneMark_model.110973_t, internal, 255, 268
-recovered GeneMark_model.110973_t, internal, 710, 786

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1029
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support