-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3355

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 97, 177
Sorry, prediction Augustus_model.g42326.t1 fails validation.
(GAC)	 AG	97-177	GT	AGG
(TTT)	 AG	585-592	CT	AGC
-recovered Augustus_model.g42326.t1, terminal, 585, 592
-recovered Augustus_model.g42326.t1, internal, 97, 177

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 10, 68
Sorry, prediction GeneMark_model.110972_t fails validation.
(GAG)	 AG	10-68	GT	AGG
(GCC)	 AG	100-239	GT	GCG
(AGA)	 AG	512-700	GT	GAG
(AGA)	 AG	722-742	GT	GAG
(ATA)	 AG	766-769	GG	AGG
-recovered GeneMark_model.110972_t, terminal, 766, 769
-recovered GeneMark_model.110972_t, internal, 10, 68
-recovered GeneMark_model.110972_t, internal, 100, 239
-recovered GeneMark_model.110972_t, internal, 512, 700
-recovered GeneMark_model.110972_t, internal, 722, 742

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1029
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support