-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3353

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10, 145
Couldn't classify 682, 832
Sorry, prediction GeneMark_model.110970_t fails validation.
(GAG)	 AG	10-145	GT	CCG
(GGT)	 AG	183-242	GT	GGG
(GGT)	 AG	276-281	GT	TGG
(GCA)	 AG	314-385	GT	TTG
(CGG)	 AG	462-530	GC	GAG
(AGG)	 AG	553-561	GT	GAG
(AGA)	 AG	588-659	GT	AGG
(AGC)	 AG	682-832	GT	AGG
-recovered GeneMark_model.110970_t, internal, 10, 145
-recovered GeneMark_model.110970_t, internal, 183, 242
-recovered GeneMark_model.110970_t, internal, 276, 281
-recovered GeneMark_model.110970_t, internal, 314, 385
-recovered GeneMark_model.110970_t, internal, 462, 530
-recovered GeneMark_model.110970_t, internal, 553, 561
-recovered GeneMark_model.110970_t, internal, 588, 659
-recovered GeneMark_model.110970_t, internal, 682, 832

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 154, 221
Couldn't classify 945, 1030
Sorry, prediction Augustus_model.g42325.t1 fails validation.
(GTC)	 AG	154-221	GT	GAG
(CGT)	 AG	597-699	GT	AGG
(GTG)	 AG	945-1030		TG
-recovered Augustus_model.g42325.t1, internal, 154, 221
-recovered Augustus_model.g42325.t1, internal, 597, 699
Couldn't classify 154, 221
Couldn't classify 945, 1027
Sorry, prediction snap_scaffold_3353-snap.1-T1 fails validation.
(GTC)	 AG	154-221	GT	GAG
(CGT)	 AG	597-699	GT	AGG
(GTG)	 AG	945-1027	GT	GAG
-recovered snap_scaffold_3353-snap.1-T1, internal, 154, 221
-recovered snap_scaffold_3353-snap.1-T1, internal, 597, 699
-recovered snap_scaffold_3353-snap.1-T1, internal, 945, 1027

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1030
-exon list size: 23


building trellis

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8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support