-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3347

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 614, 681
Couldn't classify 903, 1007
Sorry, prediction GeneMark_model.110966_t fails validation.
(GCA)	 AG	614-681	GT	CGG
(CAG)	 AG	903-1007	GC	TGG
-recovered GeneMark_model.110966_t, internal, 614, 681
-recovered GeneMark_model.110966_t, internal, 903, 1007
Couldn't classify 906, 993
Sorry, prediction snap_scaffold_3347-snap.1-T1 fails validation.
(ATG)	 CA	381-386	GT	TAG
(GCA)	 AG	614-759	GT	CTG
(CGG)	 AG	906-993	GT	CAG
-recovered snap_scaffold_3347-snap.1-T1, initial, 381, 386
-recovered snap_scaffold_3347-snap.1-T1, internal, 614, 759
-recovered snap_scaffold_3347-snap.1-T1, internal, 906, 993

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1030
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support