-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3344

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 388, 405
Couldn't classify 981, 1000
Sorry, prediction GeneMark_model.110964_t fails validation.
(GAG)	 AG	388-405	GT	GGG
(GAA)	 AG	431-460	GT	AAG
(GAG)	 AG	497-529	GT	GGG
(GAG)	 AG	561-578	GT	GGG
(AGG)	 AG	639-768	GT	AGG
(TAC)	 AG	851-870	GT	CAG
(AGA)	 AG	895-900	GT	AGG
(AGA)	 AG	923-928	GT	AGG
(AAA)	 AG	951-959	GT	GAG
(CGA)	 AG	981-1000	GT	AAG
-recovered GeneMark_model.110964_t, internal, 388, 405
-recovered GeneMark_model.110964_t, internal, 431, 460
-recovered GeneMark_model.110964_t, internal, 497, 529
-recovered GeneMark_model.110964_t, internal, 561, 578
-recovered GeneMark_model.110964_t, internal, 639, 768
-recovered GeneMark_model.110964_t, internal, 851, 870
-recovered GeneMark_model.110964_t, internal, 895, 900
-recovered GeneMark_model.110964_t, internal, 923, 928
-recovered GeneMark_model.110964_t, internal, 951, 959
-recovered GeneMark_model.110964_t, internal, 981, 1000
Couldn't classify 621, 754
Sorry, prediction snap_scaffold_3344-snap.1-T1 fails validation.
(ATG)	 TG	215-263	GT	TGG
(CGA)	 AG	344-422	GT	GGG
(GGG)	 AG	621-754	GT	CTG
-recovered snap_scaffold_3344-snap.1-T1, initial, 215, 263
-recovered snap_scaffold_3344-snap.1-T1, internal, 344, 422
-recovered snap_scaffold_3344-snap.1-T1, internal, 621, 754

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 252, 423
Sorry, prediction Augustus_model.g42321.t1 fails validation.
(GCT)	 AG	252-423	GT	AGG
-recovered Augustus_model.g42321.t1, internal, 252, 423

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1031
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support