-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3340

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 40, 60
Sorry, prediction GeneMark_model.110960_t fails validation.
(AGC)	 AG	40-60	GT	AGG
(GGA)	 AG	91-105	GT	AGG
(TGA)	 AG	126-152	GT	GAG
(AGG)	 AG	375-510	GA	AGG
-recovered GeneMark_model.110960_t, terminal, 375, 510
-recovered GeneMark_model.110960_t, internal, 40, 60
-recovered GeneMark_model.110960_t, internal, 91, 105
-recovered GeneMark_model.110960_t, internal, 126, 152

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 35, 61
Sorry, prediction GeneMark_model.110961_t fails validation.
(AAA)	 AG	35-61	GT	GCG
(AGA)	 AG	89-230	GT	GAG
-recovered GeneMark_model.110961_t, terminal, 89, 230
-recovered GeneMark_model.110961_t, internal, 35, 61
-recovered GeneMark_model.110961_t, internal, 89, 230

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1031
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support