-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_334

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61718-T1
Valid prediction for GeneMark_model.107336_t
Valid prediction for snap_scaffold_334-snap.1-T1
Couldn't classify 5282, 5344
Sorry, prediction snap_scaffold_334-snap.2-T1 fails validation.
(ATG)	 AA	3903-3959	GT	AGG
(TGC)	 AG	4345-4542	GT	ACG
(ATA)	 AG	5282-5344	GT	CGG
-recovered snap_scaffold_334-snap.2-T1, initial, 3903, 3959
-recovered snap_scaffold_334-snap.2-T1, internal, 4345, 4542
-recovered snap_scaffold_334-snap.2-T1, internal, 5282, 5344

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61719-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61719-T1 372-622-terminal-1 is invalid.
Couldn't classify 415, 618
Sorry, prediction GeneMark_model.107337_t fails validation.
(AGA)	 AG	415-618	GT	CAG
(ACT)	 AG	643-703	CA	AAC
-recovered GeneMark_model.107337_t, terminal, 643, 703
-recovered GeneMark_model.107337_t, internal, 415, 618
Couldn't classify 354, 493
Sorry, prediction snap_scaffold_334-snap.3-T1 fails validation.
(GTT)	 AG	354-493	GT	GAG
(TGC)	 AG	1485-1651	CA	AGC
-recovered snap_scaffold_334-snap.3-T1, terminal, 1485, 1651
-recovered snap_scaffold_334-snap.3-T1, internal, 354, 493
Couldn't classify 6398, 6436
Sorry, prediction GeneMark_model.107335_t fails validation.
(ATG)	 GG	5487-5543	GT	AGG
(GGT)	 AG	5664-5675	GT	GGG
(GGT)	 AG	5709-5720	GT	TGG
(GGT)	 AG	5742-5764	GT	GTG
(AGA)	 AG	6284-6340	GT	CAG
(GGA)	 AG	6398-6436	GT	GAG
-recovered GeneMark_model.107335_t, initial, 5487, 5543
-recovered GeneMark_model.107335_t, internal, 5664, 5675
-recovered GeneMark_model.107335_t, internal, 5709, 5720
-recovered GeneMark_model.107335_t, internal, 5742, 5764
-recovered GeneMark_model.107335_t, internal, 6284, 6340
-recovered GeneMark_model.107335_t, internal, 6398, 6436

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8025
-exon list size: 38


building trellis

2.5    
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22.5    
25.0    
27.5    
30.0    
32.5    
35.0    
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42.5    
45.0    
47.5    
50.0    
52.5    
55.0    
57.5    
60.0    
62.5    
65.0    
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97.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support