-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3338

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 416, 469
Couldn't classify 904, 1021
Sorry, prediction GeneMark_model.110959_t fails validation.
(ACA)	 AG	416-469	GT	ATG
(GAA)	 AG	762-878	GT	GGG
(GGG)	 AG	904-1021	GC	GGG
-recovered GeneMark_model.110959_t, internal, 416, 469
-recovered GeneMark_model.110959_t, internal, 762, 878
-recovered GeneMark_model.110959_t, internal, 904, 1021

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 42, 188
Couldn't classify 349, 420
Sorry, prediction snap_scaffold_3338-snap.1-T1 fails validation.
(ACC)	 AG	42-188	GT	TTG
(ATT)	 AG	349-420	GT	AGG
-recovered snap_scaffold_3338-snap.1-T1, internal, 42, 188
-recovered snap_scaffold_3338-snap.1-T1, internal, 349, 420

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1031
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support