-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3336

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38, 60
Sorry, prediction GeneMark_model.110956_t fails validation.
(TGT)	 AG	38-60	GT	TGG
(GGC)	 AG	110-240	CC	AAC
-recovered GeneMark_model.110956_t, terminal, 110, 240
-recovered GeneMark_model.110956_t, internal, 38, 60

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 292, 375
Sorry, prediction GeneMark_model.110957_t fails validation.
(GGG)	 AG	292-375	GT	AGG
(GGG)	 AG	396-421	GT	AGG
(GCC)	 AG	534-595	CG	AGC
-recovered GeneMark_model.110957_t, terminal, 534, 595
-recovered GeneMark_model.110957_t, internal, 292, 375
-recovered GeneMark_model.110957_t, internal, 396, 421
Couldn't classify 226, 375
Sorry, prediction GlimmerHMM_glimmerT_63347-T1 fails validation.
(GAG)	 AG	226-375	GT	AGG
(GCC)	 AG	534-595	CG	AGC
-recovered GlimmerHMM_glimmerT_63347-T1, terminal, 534, 595
-recovered GlimmerHMM_glimmerT_63347-T1, internal, 226, 375

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1032
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support