-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3333

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 33, 282
Sorry, prediction GeneMark_model.110954_t fails validation.
(AGA)	 AG	33-282	GT	AGG
(CCT)	 AG	328-354	AG	GAA
-recovered GeneMark_model.110954_t, terminal, 328, 354
-recovered GeneMark_model.110954_t, internal, 33, 282

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 57, 83
Couldn't classify 564, 737
Sorry, prediction snap_scaffold_3333-snap.1-T1 fails validation.
(CCC)	 AG	57-83	GT	CTG
(GCC)	 AG	564-737	GT	AGG
-recovered snap_scaffold_3333-snap.1-T1, internal, 57, 83
-recovered snap_scaffold_3333-snap.1-T1, internal, 564, 737
Couldn't classify 1, 83
Couldn't classify 564, 737
Sorry, prediction Augustus_model.g42319.t1 fails validation.
(AGT)	 GT	1-83	GT	CTG
(GCC)	 AG	564-737	GT	AGG
-recovered Augustus_model.g42319.t1, internal, 564, 737
Couldn't classify 1, 83
Sorry, prediction GlimmerHMM_glimmerT_63346-T1 fails validation.
(AGT)	 GT	1-83	GT	CTG
(GCC)	 AG	564-749	CC	AAC
-recovered GlimmerHMM_glimmerT_63346-T1, terminal, 564, 749

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1032
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support