-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3331

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63345-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63345-T1 642-793-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 94, 143
Sorry, prediction snap_scaffold_3331-snap.1-T1 fails validation.
(TGG)	 AG	94-143	GT	ACG
(TTA)	 AG	296-482	AA	GAA
-recovered snap_scaffold_3331-snap.1-T1, terminal, 296, 482
-recovered snap_scaffold_3331-snap.1-T1, internal, 94, 143
Couldn't classify 41, 164
Sorry, prediction GeneMark_model.110953_t fails validation.
(GGC)	 AG	41-164	GT	CTG
-recovered GeneMark_model.110953_t, internal, 41, 164

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1032
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support