-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_333

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 119, 142
Sorry, prediction GeneMark_model.107333_t fails validation.
(GGG)	 AG	119-142	GT	GAG
(AAG)	 AG	1163-1334	AC	AAA
-recovered GeneMark_model.107333_t, terminal, 1163, 1334
-recovered GeneMark_model.107333_t, internal, 119, 142
Couldn't classify 5984, 6192
Sorry, prediction snap_scaffold_333-snap.1-T1 fails validation.
(ATG)	 AA	2742-2923	GT	CGG
(GTG)	 AG	5984-6192	GT	ATG
-recovered snap_scaffold_333-snap.1-T1, initial, 2742, 2923
-recovered snap_scaffold_333-snap.1-T1, internal, 5984, 6192

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1338, 1429
Sorry, prediction GlimmerHMM_glimmerT_61717-T1 fails validation.
(GAC)	 AG	1338-1429	GT	CTG
(ATT)	 AG	1861-2016	GT	AGG
(AGC)	 AG	2897-2923	GA	GAG
-recovered GlimmerHMM_glimmerT_61717-T1, terminal, 2897, 2923
-recovered GlimmerHMM_glimmerT_61717-T1, internal, 1338, 1429
-recovered GlimmerHMM_glimmerT_61717-T1, internal, 1861, 2016
Couldn't classify 1338, 1429
Sorry, prediction snap_scaffold_333-snap.2-T1 fails validation.
(GAC)	 AG	1338-1429	GT	CTG
(ATT)	 AG	1861-2016	GT	AGG
(TGC)	 AG	3623-3649	GT	CGG
(CAT)	 AG	4650-4778	GA	GAG
-recovered snap_scaffold_333-snap.2-T1, terminal, 4650, 4778
-recovered snap_scaffold_333-snap.2-T1, internal, 1338, 1429
-recovered snap_scaffold_333-snap.2-T1, internal, 1861, 2016
-recovered snap_scaffold_333-snap.2-T1, internal, 3623, 3649
Couldn't classify 1338, 1429
Sorry, prediction GeneMark_model.107334_t fails validation.
(GAC)	 AG	1338-1429	GT	CTG
(ATT)	 AG	1861-2016	GT	AGG
(GAG)	 AG	2034-2053	GT	TGG
(CAG)	 AG	2899-2919	GT	GAG
(AAG)	 AG	2941-2970	GT	AGG
(GGA)	 AG	4853-5026	GT	AGG
(AGA)	 AG	6302-6386	GG	AAG
-recovered GeneMark_model.107334_t, terminal, 6302, 6386
-recovered GeneMark_model.107334_t, internal, 1338, 1429
-recovered GeneMark_model.107334_t, internal, 1861, 2016
-recovered GeneMark_model.107334_t, internal, 2034, 2053
-recovered GeneMark_model.107334_t, internal, 2899, 2919
-recovered GeneMark_model.107334_t, internal, 2941, 2970
-recovered GeneMark_model.107334_t, internal, 4853, 5026
Valid prediction for Augustus_model.g41025.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6192, rend_intergenic: 3256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8033
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6192, rend_intergenic: 3256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support