-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3325

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 35, 118
Sorry, prediction GeneMark_model.110948_t fails validation.
(GGA)	 AG	35-118	GT	GGG
(AGG)	 AG	191-244	GC	GTG
(ATT)	 AG	268-282	GT	GGG
(AAG)	 AG	316-336	GT	GGG
(GAA)	 AG	442-553	GC	AGG
-recovered GeneMark_model.110948_t, terminal, 442, 553
-recovered GeneMark_model.110948_t, internal, 35, 118
-recovered GeneMark_model.110948_t, internal, 191, 244
-recovered GeneMark_model.110948_t, internal, 268, 282
-recovered GeneMark_model.110948_t, internal, 316, 336
-recovered GeneMark_model.110948_t, internal, 442, 553

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1033
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support