-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3320

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 23, 165
Sorry, prediction GeneMark_model.110944_t fails validation.
(ACT)	 AG	23-165	GC	GGG
(AGA)	 AG	195-200	GT	AGG
(AGA)	 AG	227-241	GC	GAG
(AGA)	 AG	263-344	GA	GAG
-recovered GeneMark_model.110944_t, terminal, 263, 344
-recovered GeneMark_model.110944_t, internal, 23, 165
-recovered GeneMark_model.110944_t, internal, 195, 200
-recovered GeneMark_model.110944_t, internal, 227, 241

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5, 155
Couldn't classify 886, 1025
Sorry, prediction pasa_asmbl_40939.p1 fails validation.
(TAC)	 AG	5-155	GT	CAG
(CTT)	 AG	529-621	GT	CTG
(CCT)	 AG	886-1025	GT	CAG
-recovered pasa_asmbl_40939.p1, internal, 5, 155
-recovered pasa_asmbl_40939.p1, internal, 529, 621
-recovered pasa_asmbl_40939.p1, internal, 886, 1025
Valid prediction for GlimmerHMM_glimmerT_63344-T1
Couldn't classify 15, 155
Sorry, prediction GeneMark_model.110945_t fails validation.
(AGA)	 AG	15-155	GT	CAG
(CTT)	 AG	529-629	GA	AGG
-recovered GeneMark_model.110945_t, terminal, 529, 629
-recovered GeneMark_model.110945_t, internal, 15, 155
Couldn't classify 886, 1025
Sorry, prediction snap_scaffold_3320-snap.1-T1 fails validation.
(ATG)	 AG	17-155	GT	CAG
(CTT)	 AG	529-621	GT	CTG
(CCT)	 AG	886-1025	GT	CAG
-recovered snap_scaffold_3320-snap.1-T1, initial, 17, 155
-recovered snap_scaffold_3320-snap.1-T1, internal, 17, 155
-recovered snap_scaffold_3320-snap.1-T1, internal, 529, 621
-recovered snap_scaffold_3320-snap.1-T1, internal, 886, 1025
Couldn't classify 1, 155
Couldn't classify 886, 1025
Sorry, prediction Augustus_model.g42317.t1 fails validation.
(TCA)	 CT	1-155	GT	CAG
(CTT)	 AG	529-621	GT	CTG
(CCT)	 AG	886-1025	GT	CAG
-recovered Augustus_model.g42317.t1, internal, 529, 621
-recovered Augustus_model.g42317.t1, internal, 886, 1025

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1034
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support