-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_332

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107331_t
Valid prediction for GlimmerHMM_glimmerT_61715-T1
Valid prediction for GeneMark_model.107329_t
Valid prediction for snap_scaffold_332-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41023.t1
Valid prediction for GlimmerHMM_glimmerT_61714-T1
Valid prediction for GlimmerHMM_glimmerT_61716-T1
Couldn't classify 98, 233
Sorry, prediction GeneMark_model.107332_t fails validation.
(CGT)	 AG	98-233	GT	AGG
(TGG)	 AG	749-821	GT	ATG
(GAG)	 AG	847-1042	GT	AAG
-recovered GeneMark_model.107332_t, terminal, 847, 1042
-recovered GeneMark_model.107332_t, internal, 98, 233
-recovered GeneMark_model.107332_t, internal, 749, 821
-recovered GeneMark_model.107332_t, internal, 847, 1042
Couldn't classify 7764, 7829
Sorry, prediction GeneMark_model.107328_t fails validation.
(ATG)	 AG	6129-6149	GT	GAG
(AGC)	 AG	7172-7322	GT	GGG
(ATA)	 AG	7578-7630	GT	AGG
(ACC)	 AG	7764-7829	GT	AGG
-recovered GeneMark_model.107328_t, initial, 6129, 6149
-recovered GeneMark_model.107328_t, internal, 6129, 6149
-recovered GeneMark_model.107328_t, internal, 7172, 7322
-recovered GeneMark_model.107328_t, internal, 7578, 7630
-recovered GeneMark_model.107328_t, internal, 7764, 7829
Couldn't classify 7764, 7829
Sorry, prediction snap_scaffold_332-snap.1-T1 fails validation.
(ATG)	 AG	3446-3613	GT	GAG
(AGC)	 AG	7172-7322	GT	GGG
(ATA)	 AG	7578-7630	GT	AGG
(ACC)	 AG	7764-7829	GT	AGG
-recovered snap_scaffold_332-snap.1-T1, initial, 3446, 3613
-recovered snap_scaffold_332-snap.1-T1, internal, 3446, 3613
-recovered snap_scaffold_332-snap.1-T1, internal, 7172, 7322
-recovered snap_scaffold_332-snap.1-T1, internal, 7578, 7630
-recovered snap_scaffold_332-snap.1-T1, internal, 7764, 7829
Couldn't classify 109, 233
Sorry, prediction snap_scaffold_332-snap.3-T1 fails validation.
(CTA)	 AG	109-233	GT	AGG
(TGG)	 AG	749-928	GT	ATG
(ATC)	 AG	1236-1411	GT	CTG
(GTA)	 AG	2379-2406	GT	AGG
(ATA)	 AG	2694-2797	AC	GAA
-recovered snap_scaffold_332-snap.3-T1, terminal, 2694, 2797
-recovered snap_scaffold_332-snap.3-T1, internal, 109, 233
-recovered snap_scaffold_332-snap.3-T1, internal, 749, 928
-recovered snap_scaffold_332-snap.3-T1, internal, 1236, 1411
-recovered snap_scaffold_332-snap.3-T1, internal, 2379, 2406
Valid prediction for GeneMark_model.107330_t
Valid prediction for Augustus_model.g41024.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4590, rend_intergenic: 2570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5477, rend_intergenic: 5239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8035
-exon list size: 56


building trellis

1.7    
3.4    
5.2    
6.9    
8.6    
10.3    
12.1    
13.8    
15.5    
17.2    
19.0    
20.7    
22.4    
24.1    
25.9    
27.6    
29.3    
31.0    
32.8    
34.5    
36.2    
37.9    
39.7    
41.4    
43.1    
44.8    
46.6    
48.3    
50.0    
51.7    
53.4    
55.2    
56.9    
58.6    
60.3    
62.1    
63.8    
65.5    
67.2    
69.0    
70.7    
72.4    
74.1    
75.9    
77.6    
79.3    
81.0    
82.8    
84.5    
86.2    
87.9    
89.7    
91.4    
93.1    
94.8    
96.6    
98.3    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 4590, rend_intergenic: 2570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5477, rend_intergenic: 5239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support