-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3317

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 51
Couldn't classify 1005, 1026
Sorry, prediction GeneMark_model.110942_t fails validation.
(AGA)	 AG	34-51	GT	GGG
(AGA)	 AG	689-769	GT	AGG
(GAG)	 AG	796-807	GT	AGG
(AGA)	 AG	845-859	GT	AGG
(AGG)	 AG	889-918	GT	AGG
(AGT)	 AG	941-946	GT	AGG
(AGA)	 AG	1005-1026	GC	AGG
-recovered GeneMark_model.110942_t, internal, 34, 51
-recovered GeneMark_model.110942_t, internal, 689, 769
-recovered GeneMark_model.110942_t, internal, 796, 807
-recovered GeneMark_model.110942_t, internal, 845, 859
-recovered GeneMark_model.110942_t, internal, 889, 918
-recovered GeneMark_model.110942_t, internal, 941, 946
-recovered GeneMark_model.110942_t, internal, 1005, 1026

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1034
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support