-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3303

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 35, 208
Sorry, prediction GeneMark_model.110933_t fails validation.
(AGA)	 AG	35-208	GT	GGG
(GGG)	 AG	270-297	GT	AGG
(ACG)	 AG	371-549	GT	TGG
(GNG)	 AG	584-611	GA	GAG
-recovered GeneMark_model.110933_t, terminal, 584, 611
-recovered GeneMark_model.110933_t, internal, 35, 208
-recovered GeneMark_model.110933_t, internal, 270, 297
-recovered GeneMark_model.110933_t, internal, 371, 549
Valid prediction for GlimmerHMM_glimmerT_63342-T1
Couldn't classify 371, 530
Sorry, prediction snap_scaffold_3303-snap.1-T1 fails validation.
(ACG)	 AG	371-530	GT	GGG
(ACC)	 AG	786-892	TC	AAT
-recovered snap_scaffold_3303-snap.1-T1, terminal, 786, 892
-recovered snap_scaffold_3303-snap.1-T1, internal, 371, 530

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1035
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support