-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_330

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61712-T1
Couldn't classify 303, 380
Couldn't classify 7263, 7484
Sorry, prediction snap_scaffold_330-snap.1-T1 fails validation.
(GCC)	 AG	303-380	GT	ATG
(GTG)	 AG	3188-3302	GT	TGG
(CAA)	 AG	3536-3708	GT	AGG
(CAA)	 AG	3996-4056	GT	GTG
(AGC)	 AG	4856-5018	GT	AGG
(GAC)	 AG	6583-6698	GT	AGG
(GTT)	 AG	7263-7484	GT	TGG
-recovered snap_scaffold_330-snap.1-T1, internal, 303, 380
-recovered snap_scaffold_330-snap.1-T1, internal, 3188, 3302
-recovered snap_scaffold_330-snap.1-T1, internal, 3536, 3708
-recovered snap_scaffold_330-snap.1-T1, internal, 3996, 4056
-recovered snap_scaffold_330-snap.1-T1, internal, 4856, 5018
-recovered snap_scaffold_330-snap.1-T1, internal, 6583, 6698
-recovered snap_scaffold_330-snap.1-T1, internal, 7263, 7484
Couldn't classify 7274, 7484
Sorry, prediction GeneMark_model.107326_t fails validation.
(ATG)	 GC	3701-3708	GT	AGG
(GAG)	 AG	4596-4607	GT	GGG
(GGT)	 AG	4628-4648	GT	GGG
(AGA)	 AG	4685-4765	GT	GGG
(AGA)	 AG	4789-4833	GT	GGG
(AGC)	 AG	4856-4864	GT	AGG
(GGA)	 AG	4901-4915	GC	GGG
(GGC)	 AG	4941-5018	GT	AGG
(ACA)	 AG	6469-6570	GT	CTG
(GAG)	 AG	6615-6623	GT	GGG
(AGC)	 AG	6648-6698	GT	AGG
(AGC)	 AG	7274-7484	GT	TGG
-recovered GeneMark_model.107326_t, initial, 3701, 3708
-recovered GeneMark_model.107326_t, internal, 4596, 4607
-recovered GeneMark_model.107326_t, internal, 4628, 4648
-recovered GeneMark_model.107326_t, internal, 4685, 4765
-recovered GeneMark_model.107326_t, internal, 4789, 4833
-recovered GeneMark_model.107326_t, internal, 4856, 4864
-recovered GeneMark_model.107326_t, internal, 4901, 4915
-recovered GeneMark_model.107326_t, internal, 4941, 5018
-recovered GeneMark_model.107326_t, internal, 6469, 6570
-recovered GeneMark_model.107326_t, internal, 6615, 6623
-recovered GeneMark_model.107326_t, internal, 6648, 6698
-recovered GeneMark_model.107326_t, internal, 7274, 7484
Valid prediction for GlimmerHMM_glimmerT_61713-T1
Valid prediction for Augustus_model.g41022.t1
Couldn't classify 303, 380
Sorry, prediction Augustus_model.g41021.t1 fails validation.
(GCC)	 AG	303-380	GT	ATG
(GTG)	 AG	3188-3302	GT	TGG
(CAA)	 AG	3536-3708	GT	AGG
(CAA)	 AG	3996-4074	CA	AGC
-recovered Augustus_model.g41021.t1, terminal, 3996, 4074
-recovered Augustus_model.g41021.t1, internal, 303, 380
-recovered Augustus_model.g41021.t1, internal, 3188, 3302
-recovered Augustus_model.g41021.t1, internal, 3536, 3708

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_330-snap.2-T1
Couldn't classify 7776, 8072
Sorry, prediction GeneMark_model.107325_t fails validation.
(ATG)	 AC	4460-4599	GT	GGG
(GAG)	 AG	4628-4708	GT	GAG
(AGC)	 AG	4814-4843	GT	GGG
(AGC)	 AG	7776-8072	GC	AGG
-recovered GeneMark_model.107325_t, initial, 4460, 4599
-recovered GeneMark_model.107325_t, internal, 4628, 4708
-recovered GeneMark_model.107325_t, internal, 4814, 4843
-recovered GeneMark_model.107325_t, internal, 7776, 8072

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7484, rend_intergenic: 622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8090
-exon list size: 56


building trellis

1.7    
3.4    
5.2    
6.9    
8.6    
10.3    
12.1    
13.8    
15.5    
17.2    
19.0    
20.7    
22.4    
24.1    
25.9    
27.6    
29.3    
31.0    
32.8    
34.5    
36.2    
37.9    
39.7    
41.4    
43.1    
44.8    
46.6    
48.3    
50.0    
51.7    
53.4    
55.2    
56.9    
58.6    
60.3    
62.1    
63.8    
65.5    
67.2    
69.0    
70.7    
72.4    
74.1    
75.9    
77.6    
79.3    
81.0    
82.8    
84.5    
86.2    
87.9    
89.7    
91.4    
93.1    
94.8    
96.6    
98.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7484, rend_intergenic: 622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support