-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_33

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60967-T1
Valid prediction for GlimmerHMM_glimmerT_60962-T1
Valid prediction for GlimmerHMM_glimmerT_60965-T1
Valid prediction for snap_scaffold_33-snap.4-T1
Valid prediction for Augustus_model.g40555.t1
Valid prediction for GeneMark_model.106160_t
Valid prediction for Augustus_model.g40554.t1
Valid prediction for GlimmerHMM_glimmerT_60964-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.106162_t
Valid prediction for snap_scaffold_33-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_60966-T1
Valid prediction for Augustus_model.g40556.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60963-T1
Valid prediction for GeneMark_model.106161_t
Couldn't classify 40812, 41021
Sorry, prediction Augustus_model.g40553.t1 fails validation.
(ATG)	 AA	38904-39407	GT	TGG
(GAC)	 AG	39475-39648	GT	CGG
(GTG)	 AG	39966-40094	GT	AAG
(TCT)	 AG	40812-41021		CT
-recovered Augustus_model.g40553.t1, initial, 38904, 39407
-recovered Augustus_model.g40553.t1, internal, 39475, 39648
-recovered Augustus_model.g40553.t1, internal, 39966, 40094
Valid prediction for snap_scaffold_33-snap.1-T1
Valid prediction for snap_scaffold_33-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 41021
-exon list size: 51


building trellis

1.9    
3.8    
5.7    
7.5    
9.4    
11.3    
13.2    
15.1    
17.0    
18.9    
20.8    
22.6    
24.5    
26.4    
28.3    
30.2    
32.1    
34.0    
35.8    
37.7    
39.6    
41.5    
43.4    
45.3    
47.2    
49.1    
50.9    
52.8    
54.7    
56.6    
58.5    
60.4    
62.3    
64.2    
66.0    
67.9    
69.8    
71.7    
73.6    
75.5    
77.4    
79.2    
81.1    
83.0    
84.9    
86.8    
88.7    
90.6    
92.5    
94.3    
96.2    
98.1    
-found 5 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 28750 - 41021
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support