-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3299

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 76, 237
Couldn't classify 691, 918
Sorry, prediction pasa_asmbl_40935.p1 fails validation.
(GGT)	 CA	76-237	GT	GGG
(GCA)	 AG	691-918	TA	GGT
Couldn't classify 77, 237
Couldn't classify 691, 917
Sorry, prediction Augustus_model.g42312.t1 fails validation.
(GTC)	 AG	77-237	GT	GGG
(GCA)	 AG	691-917	GT	AGG
-recovered Augustus_model.g42312.t1, internal, 77, 237
-recovered Augustus_model.g42312.t1, internal, 691, 917
Couldn't classify 77, 237
Couldn't classify 691, 917
Sorry, prediction GeneMark_model.110931_t fails validation.
(GTC)	 AG	77-237	GT	GGG
(GCA)	 AG	691-917	GT	AGG
-recovered GeneMark_model.110931_t, internal, 77, 237
-recovered GeneMark_model.110931_t, internal, 691, 917
Couldn't classify 691, 917
Sorry, prediction GlimmerHMM_glimmerT_63341-T1 fails validation.
(ATG)	 CG	109-237	GT	GGG
(GCA)	 AG	691-917	GT	AGG
-recovered GlimmerHMM_glimmerT_63341-T1, initial, 109, 237
-recovered GlimmerHMM_glimmerT_63341-T1, internal, 691, 917
Couldn't classify 77, 237
Couldn't classify 691, 917
Sorry, prediction snap_scaffold_3299-snap.1-T1 fails validation.
(GTC)	 AG	77-237	GT	GGG
(GCA)	 AG	691-917	GT	AGG
-recovered snap_scaffold_3299-snap.1-T1, internal, 77, 237
-recovered snap_scaffold_3299-snap.1-T1, internal, 691, 917

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 127, 212
Couldn't classify 813, 953
Sorry, prediction snap_scaffold_3299-snap.2-T1 fails validation.
(GTC)	 AG	127-212	GT	TGG
(GTA)	 AG	813-953	GT	CAG
-recovered snap_scaffold_3299-snap.2-T1, internal, 127, 212
-recovered snap_scaffold_3299-snap.2-T1, internal, 813, 953

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 917, rend_intergenic: 84  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1036
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 917, rend_intergenic: 84  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support