-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3298

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 99
Sorry, prediction GeneMark_model.110929_t fails validation.
(AGA)	 AG	34-99	GC	AGG
(ACA)	 AG	124-253	AA	AGA
-recovered GeneMark_model.110929_t, terminal, 124, 253
-recovered GeneMark_model.110929_t, internal, 34, 99
Couldn't classify 999, 1026
Sorry, prediction GeneMark_model.110930_t fails validation.
(ATG)	 GG	293-303	GT	TTG
(GCC)	 AG	384-428	GT	AGG
(AGA)	 AG	499-583	GT	GGG
(CCC)	 AG	999-1026	GC	CAG
-recovered GeneMark_model.110930_t, initial, 293, 303
-recovered GeneMark_model.110930_t, internal, 384, 428
-recovered GeneMark_model.110930_t, internal, 499, 583
-recovered GeneMark_model.110930_t, internal, 999, 1026

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1036
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support