-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3293

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 47, 91
Couldn't classify 870, 923
Sorry, prediction GeneMark_model.110926_t fails validation.
(AGC)	 AG	47-91	GT	AGG
(AGA)	 AG	442-450	GT	GAG
(GGA)	 AG	478-498	GT	GAG
(AGA)	 AG	532-594	GT	AGG
(CGA)	 AG	870-923	GT	GGG
-recovered GeneMark_model.110926_t, internal, 47, 91
-recovered GeneMark_model.110926_t, internal, 442, 450
-recovered GeneMark_model.110926_t, internal, 478, 498
-recovered GeneMark_model.110926_t, internal, 532, 594
-recovered GeneMark_model.110926_t, internal, 870, 923

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 830, 939
Sorry, prediction Augustus_model.g42310.t1 fails validation.
(ATG)	 TC	425-455	GT	AGG
(GGT)	 AG	620-734	GT	TTG
(AAT)	 AG	830-939	GT	GGG
-recovered Augustus_model.g42310.t1, initial, 425, 455
-recovered Augustus_model.g42310.t1, internal, 620, 734
-recovered Augustus_model.g42310.t1, internal, 830, 939

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1037
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support