-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3290

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 56, 70
Couldn't classify 905, 985
Sorry, prediction GeneMark_model.110924_t fails validation.
(GAA)	 AG	56-70	GT	AGG
(GAA)	 AG	106-120	GT	AGG
(GAA)	 AG	180-194	GT	AGG
(GAA)	 AG	230-244	GT	AGG
(ACA)	 AG	268-315	GT	GTG
(AGC)	 AG	460-520	GT	CAG
(CAG)	 AG	905-985	GT	AGG
-recovered GeneMark_model.110924_t, internal, 56, 70
-recovered GeneMark_model.110924_t, internal, 106, 120
-recovered GeneMark_model.110924_t, internal, 180, 194
-recovered GeneMark_model.110924_t, internal, 230, 244
-recovered GeneMark_model.110924_t, internal, 268, 315
-recovered GeneMark_model.110924_t, internal, 460, 520
-recovered GeneMark_model.110924_t, internal, 905, 985

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1038
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support