-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3288

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 108, 223
Sorry, prediction Augustus_model.g42309.t1 fails validation.
(GAT)	 AG	108-223	GT	TGG
(TGG)	 AG	631-815	GC	GAG
-recovered Augustus_model.g42309.t1, terminal, 631, 815
-recovered Augustus_model.g42309.t1, internal, 108, 223
-recovered Augustus_model.g42309.t1, internal, 631, 815
Valid prediction for GlimmerHMM_glimmerT_63337-T1
Couldn't classify 108, 223
Couldn't classify 631, 811
Sorry, prediction snap_scaffold_3288-snap.1-T1 fails validation.
(GAT)	 AG	108-223	GT	TGG
(TGG)	 AG	631-811	GT	AAG
-recovered snap_scaffold_3288-snap.1-T1, internal, 108, 223
-recovered snap_scaffold_3288-snap.1-T1, internal, 631, 811
Couldn't classify 106, 223
Couldn't classify 631, 812
Sorry, prediction pasa_asmbl_40932.p1 fails validation.
(AGG)	 CC	106-223	GT	TGG
(TGG)	 AG	631-812	TG	AGT

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 32, 43
Couldn't classify 972, 1022
Sorry, prediction GeneMark_model.110923_t fails validation.
(AGA)	 AG	32-43	GT	AGG
(AGA)	 AG	76-90	GT	CAG
(GGA)	 AG	116-172	GT	TTG
(TGA)	 AG	198-362	GT	CCG
(GGC)	 AG	425-448	GT	GAG
(TGT)	 AG	499-507	GT	GTG
(AGA)	 AG	529-570	GT	GAG
(ATG)	 AG	622-639	GT	ATG
(AGT)	 AG	669-695	GT	GAG
(TGT)	 AG	724-744	GT	GAG
(GGT)	 AG	770-780	GT	AGG
(GGG)	 AG	819-832	GT	AGG
(CCG)	 AG	892-944	GT	AGG
(AAG)	 AG	972-1022	GT	GGG
-recovered GeneMark_model.110923_t, initial, 622, 639
-recovered GeneMark_model.110923_t, internal, 32, 43
-recovered GeneMark_model.110923_t, internal, 76, 90
-recovered GeneMark_model.110923_t, internal, 116, 172
-recovered GeneMark_model.110923_t, internal, 198, 362
-recovered GeneMark_model.110923_t, internal, 425, 448
-recovered GeneMark_model.110923_t, internal, 499, 507
-recovered GeneMark_model.110923_t, internal, 529, 570
-recovered GeneMark_model.110923_t, internal, 622, 639
-recovered GeneMark_model.110923_t, internal, 669, 695
-recovered GeneMark_model.110923_t, internal, 724, 744
-recovered GeneMark_model.110923_t, internal, 770, 780
-recovered GeneMark_model.110923_t, internal, 819, 832
-recovered GeneMark_model.110923_t, internal, 892, 944
-recovered GeneMark_model.110923_t, internal, 972, 1022

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1038
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support