-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3287

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g42308.t1
add_exon() Sorry, Augustus_model.g42308.t1 74-552-terminal-1 is invalid.
Couldn't classify 74, 434
Couldn't classify 708, 788
Sorry, prediction GeneMark_model.110922_t fails validation.
(GTG)	 AG	74-434	GT	CAG
(GCC)	 AG	464-598	GT	GAG
(AGG)	 AG	623-634	GT	GAG
(GAG)	 AG	661-678	GT	GAG
(GAG)	 AG	708-788	GT	AAG
-recovered GeneMark_model.110922_t, internal, 74, 434
-recovered GeneMark_model.110922_t, internal, 464, 598
-recovered GeneMark_model.110922_t, internal, 623, 634
-recovered GeneMark_model.110922_t, internal, 661, 678
-recovered GeneMark_model.110922_t, internal, 708, 788
Couldn't classify 74, 455
Couldn't classify 464, 837
Sorry, prediction snap_scaffold_3287-snap.1-T1 fails validation.
(GTG)	 AG	74-455	GT	CAG
(GCC)	 AG	464-837	GT	ATG
-recovered snap_scaffold_3287-snap.1-T1, internal, 74, 455
-recovered snap_scaffold_3287-snap.1-T1, internal, 464, 837
Sorry, intron length (7) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63336-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1038
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support