-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3286

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 310, 423
Couldn't classify 895, 1019
Sorry, prediction GeneMark_model.110921_t fails validation.
(AGC)	 AG	310-423	GT	GTG
(AGA)	 AG	467-505	GT	CAG
(GAC)	 AG	543-554	GT	CAG
(AGA)	 AG	576-623	GT	GAG
(AGA)	 AG	645-674	GT	CAG
(TGA)	 AG	701-748	GT	CAG
(TGA)	 AG	774-869	GT	CAG
(TGA)	 AG	895-1019	GT	CAG
-recovered GeneMark_model.110921_t, internal, 310, 423
-recovered GeneMark_model.110921_t, internal, 467, 505
-recovered GeneMark_model.110921_t, internal, 543, 554
-recovered GeneMark_model.110921_t, internal, 576, 623
-recovered GeneMark_model.110921_t, internal, 645, 674
-recovered GeneMark_model.110921_t, internal, 701, 748
-recovered GeneMark_model.110921_t, internal, 774, 869
-recovered GeneMark_model.110921_t, internal, 895, 1019

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1038
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support