-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3283

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3283-snap.1-T1
Couldn't classify 35, 110
Couldn't classify 1001, 1007
Sorry, prediction GeneMark_model.110919_t fails validation.
(AAG)	 AG	35-110	GT	AGG
(AGG)	 AG	140-366	GT	GGG
(AAG)	 AG	403-417	GT	GGG
(AGG)	 AG	441-527	GT	AAG
(GGG)	 AG	630-656	GT	GGG
(AGG)	 AG	678-710	GT	GGG
(AGC)	 AG	739-756	GT	GGG
(TCG)	 AG	956-961	GT	AGG
(GGA)	 AG	1001-1007	GT	AGG
-recovered GeneMark_model.110919_t, internal, 35, 110
-recovered GeneMark_model.110919_t, internal, 140, 366
-recovered GeneMark_model.110919_t, internal, 403, 417
-recovered GeneMark_model.110919_t, internal, 441, 527
-recovered GeneMark_model.110919_t, internal, 630, 656
-recovered GeneMark_model.110919_t, internal, 678, 710
-recovered GeneMark_model.110919_t, internal, 739, 756
-recovered GeneMark_model.110919_t, internal, 956, 961
-recovered GeneMark_model.110919_t, internal, 1001, 1007

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1038
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support