-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3278

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 257, 280
Couldn't classify 485, 524
Sorry, prediction GeneMark_model.110916_t fails validation.
(GGA)	 AG	257-280	GT	GGG
(GGA)	 AG	307-342	GT	ATG
(GGA)	 AG	367-402	GT	ATG
(TGA)	 AG	428-460	GT	ATG
(GGA)	 AG	485-524	GT	GAG
-recovered GeneMark_model.110916_t, internal, 257, 280
-recovered GeneMark_model.110916_t, internal, 307, 342
-recovered GeneMark_model.110916_t, internal, 367, 402
-recovered GeneMark_model.110916_t, internal, 428, 460
-recovered GeneMark_model.110916_t, internal, 485, 524

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1039
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support