-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3276

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 261, 441
Sorry, prediction snap_scaffold_3276-snap.1-T1 fails validation.
(GCT)	 AG	261-441	GT	CTG
-recovered snap_scaffold_3276-snap.1-T1, internal, 261, 441

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 41
Sorry, prediction GeneMark_model.110915_t fails validation.
(AGA)	 AG	33-41	GT	AAG
(GGT)	 AG	262-282	GT	GAG
(AGA)	 AG	325-399	GT	GAG
(AGC)	 AG	492-510	GT	GAG
(ACT)	 AG	585-686	CG	AAC
-recovered GeneMark_model.110915_t, terminal, 585, 686
-recovered GeneMark_model.110915_t, internal, 33, 41
-recovered GeneMark_model.110915_t, internal, 262, 282
-recovered GeneMark_model.110915_t, internal, 325, 399
-recovered GeneMark_model.110915_t, internal, 492, 510

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1039
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support