-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3275

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 133, 250
Couldn't classify 451, 551
Sorry, prediction GeneMark_model.110914_t fails validation.
(GGC)	 AG	133-250	GT	AGG
(ACA)	 AG	451-551	GT	GAG
-recovered GeneMark_model.110914_t, internal, 133, 250
-recovered GeneMark_model.110914_t, internal, 451, 551
Valid prediction for GlimmerHMM_glimmerT_63334-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63334-T1 521-672-terminal-1 is invalid.
Valid prediction for Augustus_model.g42306.t1
add_exon() Sorry, Augustus_model.g42306.t1 39-231-terminal-1 is invalid.
Couldn't classify 133, 250
Couldn't classify 487, 613
Sorry, prediction snap_scaffold_3275-snap.1-T1 fails validation.
(GGC)	 AG	133-250	GT	AGG
(TCA)	 AG	487-613	GT	TCG
-recovered snap_scaffold_3275-snap.1-T1, internal, 133, 250
-recovered snap_scaffold_3275-snap.1-T1, internal, 487, 613

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1039
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support