-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_327

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107323_t
Couldn't classify 3380, 3582
Sorry, prediction snap_scaffold_327-snap.2-T1 fails validation.
(GTG)	 AG	3380-3582	GT	TGG
(GAC)	 AG	4495-4754	GT	GGG
(TCT)	 AG	5149-5398	TG	AGT
-recovered snap_scaffold_327-snap.2-T1, terminal, 5149, 5398
-recovered snap_scaffold_327-snap.2-T1, internal, 3380, 3582
-recovered snap_scaffold_327-snap.2-T1, internal, 4495, 4754
Couldn't classify 7596, 7799
Sorry, prediction snap_scaffold_327-snap.3-T1 fails validation.
(ATG)	 GC	6261-6335	GT	AAG
(CTC)	 AG	7596-7799	GT	TGG
-recovered snap_scaffold_327-snap.3-T1, initial, 6261, 6335
-recovered snap_scaffold_327-snap.3-T1, internal, 7596, 7799

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 321, 413
Couldn't classify 8034, 8102
Sorry, prediction snap_scaffold_327-snap.1-T1 fails validation.
(ACC)	 AG	321-413	GT	TGG
(CAC)	 AG	510-596	GT	AGG
(CTA)	 AG	1776-1829	GT	TGG
(GTG)	 AG	2728-2916	GT	AGG
(GTG)	 AG	3072-3167	GT	ACG
(GGA)	 AG	3409-3652	GT	AGG
(CTG)	 AG	4560-4688	GT	TGG
(GTC)	 AG	7516-7641	GT	AGG
(AAA)	 AG	8034-8102	GT	GGG
-recovered snap_scaffold_327-snap.1-T1, internal, 321, 413
-recovered snap_scaffold_327-snap.1-T1, internal, 510, 596
-recovered snap_scaffold_327-snap.1-T1, internal, 1776, 1829
-recovered snap_scaffold_327-snap.1-T1, internal, 2728, 2916
-recovered snap_scaffold_327-snap.1-T1, internal, 3072, 3167
-recovered snap_scaffold_327-snap.1-T1, internal, 3409, 3652
-recovered snap_scaffold_327-snap.1-T1, internal, 4560, 4688
-recovered snap_scaffold_327-snap.1-T1, internal, 7516, 7641
-recovered snap_scaffold_327-snap.1-T1, internal, 8034, 8102
Valid prediction for GeneMark_model.107322_t
Couldn't classify 2728, 2916
Sorry, prediction pasa_asmbl_40930.p1 fails validation.
(GTG)	 AG	2728-2916	GT	AGG
(GTG)	 AG	3072-3167	GT	ACG
(GGA)	 AG	3409-3652	GT	AGG
(CTG)	 AG	4560-4635	GT	AGG
(GTC)	 AG	7516-7630	GC	GAG
-recovered pasa_asmbl_40930.p1, terminal, 7516, 7630
-recovered pasa_asmbl_40930.p1, internal, 2728, 2916
-recovered pasa_asmbl_40930.p1, internal, 3072, 3167
-recovered pasa_asmbl_40930.p1, internal, 3409, 3652
-recovered pasa_asmbl_40930.p1, internal, 4560, 4635
-recovered pasa_asmbl_40930.p1, internal, 7516, 7630
Couldn't classify 8034, 8102
Sorry, prediction Augustus_model.g41020.t1 fails validation.
(ATG)	 CC	327-413	GT	TGG
(CAC)	 AG	510-596	GT	AGG
(CTA)	 AG	1776-1903	GT	TGG
(TCT)	 AG	2224-2278	GT	AGG
(GTG)	 AG	2728-2916	GT	AGG
(GTG)	 AG	3072-3167	GT	ACG
(GGA)	 AG	3409-3652	GT	AGG
(CTG)	 AG	4560-4688	GT	TGG
(GTC)	 AG	7516-7641	GT	AGG
(AAA)	 AG	8034-8102	GT	GGG
-recovered Augustus_model.g41020.t1, initial, 327, 413
-recovered Augustus_model.g41020.t1, internal, 510, 596
-recovered Augustus_model.g41020.t1, internal, 1776, 1903
-recovered Augustus_model.g41020.t1, internal, 2224, 2278
-recovered Augustus_model.g41020.t1, internal, 2728, 2916
-recovered Augustus_model.g41020.t1, internal, 3072, 3167
-recovered Augustus_model.g41020.t1, internal, 3409, 3652
-recovered Augustus_model.g41020.t1, internal, 4560, 4688
-recovered Augustus_model.g41020.t1, internal, 7516, 7641
-recovered Augustus_model.g41020.t1, internal, 8034, 8102
Valid prediction for GlimmerHMM_glimmerT_61710-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7801, rend_intergenic: 3380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8121
-exon list size: 38


building trellis

2.5    
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90.0    
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95.0    
97.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7801, rend_intergenic: 3380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support