-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3268

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 212, 402
Couldn't classify 487, 975
Sorry, prediction snap_scaffold_3268-snap.1-T1 fails validation.
(ATT)	 AG	212-402	GT	AGG
(CGG)	 AG	487-975	GT	GGG
-recovered snap_scaffold_3268-snap.1-T1, internal, 212, 402
-recovered snap_scaffold_3268-snap.1-T1, internal, 487, 975
Couldn't classify 212, 330
Couldn't classify 487, 975
Sorry, prediction Augustus_model.g42304.t1 fails validation.
(ATT)	 AG	212-330	GT	GGG
(CGG)	 AG	487-975	GT	GGG
-recovered Augustus_model.g42304.t1, internal, 212, 330
-recovered Augustus_model.g42304.t1, internal, 487, 975
Valid prediction for GlimmerHMM_glimmerT_63332-T1
Couldn't classify 39, 74
Couldn't classify 1003, 1031
Sorry, prediction GeneMark_model.110909_t fails validation.
(GGA)	 AG	39-74	GT	AGG
(GGA)	 AG	100-125	GT	ATG
(ACA)	 AG	243-330	GT	GGG
(GGA)	 AG	360-418	GT	AGG
(CGG)	 AG	487-979	GT	GGG
(GGC)	 AG	1003-1031	GC	GGG
-recovered GeneMark_model.110909_t, internal, 39, 74
-recovered GeneMark_model.110909_t, internal, 100, 125
-recovered GeneMark_model.110909_t, internal, 243, 330
-recovered GeneMark_model.110909_t, internal, 360, 418
-recovered GeneMark_model.110909_t, internal, 487, 979
-recovered GeneMark_model.110909_t, internal, 1003, 1031

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1040
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support