-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3267

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 44, 180
Couldn't classify 659, 818
Sorry, prediction pasa_asmbl_40929.p1 fails validation.
(GCT)	 TG	44-180	GT	TAG
(CTG)	 AG	659-818	AG	GAA
Valid prediction for GeneMark_model.110908_t
Couldn't classify 39, 126
Couldn't classify 659, 820
Sorry, prediction snap_scaffold_3267-snap.1-T1 fails validation.
(AGT)	 AG	39-126	GT	AGG
(CTG)	 AG	659-820	GT	AGG
-recovered snap_scaffold_3267-snap.1-T1, internal, 39, 126
-recovered snap_scaffold_3267-snap.1-T1, internal, 659, 820
Couldn't classify 659, 820
Sorry, prediction Augustus_model.g42303.t1 fails validation.
(CTG)	 AG	659-820	GT	AGG
-recovered Augustus_model.g42303.t1, internal, 659, 820

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1041
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support