-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3266

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 66, 134
Sorry, prediction GeneMark_model.110907_t fails validation.
(GAA)	 AG	66-134	GT	GTG
(GAT)	 AG	589-603	GT	GGG
(GGA)	 AG	630-659	GT	GGG
(GGA)	 AG	686-905	CA	AAC
-recovered GeneMark_model.110907_t, terminal, 686, 905
-recovered GeneMark_model.110907_t, internal, 66, 134
-recovered GeneMark_model.110907_t, internal, 589, 603
-recovered GeneMark_model.110907_t, internal, 630, 659

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 263, 338
Couldn't classify 939, 1000
Sorry, prediction snap_scaffold_3266-snap.1-T1 fails validation.
(CTC)	 AG	263-338	GT	GGG
(AAG)	 AG	733-799	GT	AAG
(GGT)	 AG	939-1000	GT	ATG
-recovered snap_scaffold_3266-snap.1-T1, internal, 263, 338
-recovered snap_scaffold_3266-snap.1-T1, internal, 733, 799
-recovered snap_scaffold_3266-snap.1-T1, internal, 939, 1000
Couldn't classify 263, 338
Sorry, prediction GlimmerHMM_glimmerT_63331-T1 fails validation.
(CTC)	 AG	263-338	GT	GGG
(AAG)	 AG	733-803	GG	GAG
-recovered GlimmerHMM_glimmerT_63331-T1, terminal, 733, 803
-recovered GlimmerHMM_glimmerT_63331-T1, internal, 263, 338
Couldn't classify 263, 338
Couldn't classify 939, 1000
Sorry, prediction Augustus_model.g42302.t1 fails validation.
(CTC)	 AG	263-338	GT	GGG
(AAG)	 AG	733-799	GT	AAG
(GGT)	 AG	939-1000	GT	ATG
-recovered Augustus_model.g42302.t1, internal, 263, 338
-recovered Augustus_model.g42302.t1, internal, 733, 799
-recovered Augustus_model.g42302.t1, internal, 939, 1000

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1041
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support