-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3265

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 316, 478
Couldn't classify 797, 870
Sorry, prediction Augustus_model.g42301.t1 fails validation.
(GTT)	 AG	316-478	GT	AGG
(ATA)	 AG	797-870	GT	TGG
-recovered Augustus_model.g42301.t1, internal, 316, 478
-recovered Augustus_model.g42301.t1, internal, 797, 870
Valid prediction for GlimmerHMM_glimmerT_63330-T1
Couldn't classify 876, 983
Sorry, prediction snap_scaffold_3265-snap.1-T1 fails validation.
(ATG)	 CA	775-870	GT	TGG
(GAG)	 AG	876-983	GT	AAG
-recovered snap_scaffold_3265-snap.1-T1, initial, 775, 870
-recovered snap_scaffold_3265-snap.1-T1, internal, 876, 983
Sorry, intron length (4) is less than minimum required (10)
Couldn't classify 316, 478
Couldn't classify 1005, 1032
Sorry, prediction GeneMark_model.110906_t fails validation.
(GTT)	 AG	316-478	GT	AGG
(ATA)	 AG	797-944	GT	AGG
(GAG)	 AG	978-983	GT	AAG
(GAG)	 AG	1005-1032	GC	GGG
-recovered GeneMark_model.110906_t, internal, 316, 478
-recovered GeneMark_model.110906_t, internal, 797, 944
-recovered GeneMark_model.110906_t, internal, 978, 983
-recovered GeneMark_model.110906_t, internal, 1005, 1032

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1041
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support