-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3264

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63329-T1
Couldn't classify 165, 404
Couldn't classify 440, 524
Sorry, prediction snap_scaffold_3264-snap.1-T1 fails validation.
(TGG)	 AG	165-404	GT	GGG
(AAT)	 AG	440-524	GT	AGG
-recovered snap_scaffold_3264-snap.1-T1, internal, 165, 404
-recovered snap_scaffold_3264-snap.1-T1, internal, 440, 524
Valid prediction for Augustus_model.g42300.t1
Couldn't classify 165, 282
Sorry, prediction GeneMark_model.110904_t fails validation.
(TGG)	 AG	165-282	GT	TGG
(CGC)	 AG	312-404	GT	GGG
(GGA)	 AG	496-524	GT	AGG
(GCT)	 AG	621-692	GG	GAG
-recovered GeneMark_model.110904_t, terminal, 621, 692
-recovered GeneMark_model.110904_t, internal, 165, 282
-recovered GeneMark_model.110904_t, internal, 312, 404
-recovered GeneMark_model.110904_t, internal, 496, 524

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110905_t
add_exon() Sorry, GeneMark_model.110905_t 17-155-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1041
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support