-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3260

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 708, 913
Sorry, prediction snap_scaffold_3260-snap.1-T1 fails validation.
(ACG)	 AG	708-913	GT	TAG
-recovered snap_scaffold_3260-snap.1-T1, internal, 708, 913
Valid prediction for GlimmerHMM_glimmerT_63328-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63328-T1 708-925-terminal-1 is invalid.
Couldn't classify 708, 921
Couldn't classify 947, 967
Sorry, prediction GeneMark_model.110903_t fails validation.
(ACG)	 AG	708-921	GT	CAG
(TGT)	 AG	947-967	GT	GGG
-recovered GeneMark_model.110903_t, internal, 708, 921
-recovered GeneMark_model.110903_t, internal, 947, 967

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g42299.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1041
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support