-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_326

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8005, 8101
Sorry, prediction GeneMark_model.107321_t fails validation.
(ATG)	 CC	5889-5976	GT	CAG
(TCT)	 AG	7274-7408	GT	ACG
(GCC)	 AG	7841-7960	GT	TGG
(CCA)	 AG	8005-8101	GC	GGG
-recovered GeneMark_model.107321_t, initial, 5889, 5976
-recovered GeneMark_model.107321_t, internal, 7274, 7408
-recovered GeneMark_model.107321_t, internal, 7841, 7960
-recovered GeneMark_model.107321_t, internal, 8005, 8101
Valid prediction for GlimmerHMM_glimmerT_61708-T1
Valid prediction for GeneMark_model.107320_t
Couldn't classify 7841, 7960
Sorry, prediction GlimmerHMM_glimmerT_61709-T1 fails validation.
(ATG)	 CC	5889-5976	GT	CAG
(TCT)	 AG	7274-7408	GT	ACG
(GCC)	 AG	7841-7960	GT	TGG
-recovered GlimmerHMM_glimmerT_61709-T1, initial, 5889, 5976
-recovered GlimmerHMM_glimmerT_61709-T1, internal, 7274, 7408
-recovered GlimmerHMM_glimmerT_61709-T1, internal, 7841, 7960
Couldn't classify 7841, 7960
Sorry, prediction Augustus_model.g41019.t1 fails validation.
(ATG)	 CT	5004-5018	GT	AGG
(CGG)	 AG	5178-5273	GT	GAG
(GGT)	 AG	5913-5976	GT	CAG
(TCT)	 AG	7274-7408	GT	ACG
(GCC)	 AG	7841-7960	GT	TGG
-recovered Augustus_model.g41019.t1, initial, 5004, 5018
-recovered Augustus_model.g41019.t1, internal, 5178, 5273
-recovered Augustus_model.g41019.t1, internal, 5913, 5976
-recovered Augustus_model.g41019.t1, internal, 7274, 7408
-recovered Augustus_model.g41019.t1, internal, 7841, 7960
Couldn't classify 5178, 5273
Couldn't classify 7841, 8077
Sorry, prediction snap_scaffold_326-snap.2-T1 fails validation.
(CGG)	 AG	5178-5273	GT	GAG
(GGT)	 AG	5913-5976	GT	CAG
(ACA)	 AG	6445-6486	GT	AGG
(TCT)	 AG	7274-7408	GT	ACG
(GCC)	 AG	7841-8077	GT	TGG
-recovered snap_scaffold_326-snap.2-T1, internal, 5178, 5273
-recovered snap_scaffold_326-snap.2-T1, internal, 5913, 5976
-recovered snap_scaffold_326-snap.2-T1, internal, 6445, 6486
-recovered snap_scaffold_326-snap.2-T1, internal, 7274, 7408
-recovered snap_scaffold_326-snap.2-T1, internal, 7841, 8077
Valid prediction for CodingQuarry_transcript_46417-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6812, 7579
Sorry, prediction snap_scaffold_326-snap.1-T1 fails validation.
(ATG)	 TA	5819-5854	GT	TGG
(GGG)	 AG	6543-6730	GT	AGG
(ACA)	 AG	6812-7579	GT	CAG
-recovered snap_scaffold_326-snap.1-T1, initial, 5819, 5854
-recovered snap_scaffold_326-snap.1-T1, internal, 6543, 6730
-recovered snap_scaffold_326-snap.1-T1, internal, 6812, 7579
Couldn't classify 7267, 8098
Sorry, prediction GeneMark_model.107319_t fails validation.
(ATG)	 GC	6922-7242	GT	CAG
(CCA)	 AG	7267-8098	GC	CAG
-recovered GeneMark_model.107319_t, initial, 6922, 7242
-recovered GeneMark_model.107319_t, internal, 7267, 8098
Valid prediction for GlimmerHMM_glimmerT_61707-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8121
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support