-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3257

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 17, 49
Sorry, prediction GeneMark_model.110902_t fails validation.
(TCT)	 AG	17-49	GT	ATG
(AAC)	 AG	76-99	GT	GAG
(AGA)	 AG	128-160	GT	GGG
(ATC)	 AG	187-201	GT	GAG
(AAA)	 AG	224-244	GT	GAG
(GGA)	 AG	295-342	GT	GAG
(AGA)	 AG	367-382	CA	GAC
-recovered GeneMark_model.110902_t, terminal, 367, 382
-recovered GeneMark_model.110902_t, internal, 17, 49
-recovered GeneMark_model.110902_t, internal, 76, 99
-recovered GeneMark_model.110902_t, internal, 128, 160
-recovered GeneMark_model.110902_t, internal, 187, 201
-recovered GeneMark_model.110902_t, internal, 224, 244
-recovered GeneMark_model.110902_t, internal, 295, 342

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1042
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support