-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3250

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 265, 312
Couldn't classify 996, 1033
Sorry, prediction GeneMark_model.110899_t fails validation.
(ACA)	 AG	265-312	GC	AGG
(ACA)	 AG	371-445	GT	GAG
(AAA)	 AG	467-508	GC	AGG
(ACA)	 AG	531-599	GT	GAG
(AGA)	 AG	629-649	GT	GAG
(AGA)	 AG	675-707	GT	GTG
(AGA)	 AG	735-857	GT	AGG
(AAG)	 AG	996-1033	GT	GAG
-recovered GeneMark_model.110899_t, internal, 265, 312
-recovered GeneMark_model.110899_t, internal, 371, 445
-recovered GeneMark_model.110899_t, internal, 467, 508
-recovered GeneMark_model.110899_t, internal, 531, 599
-recovered GeneMark_model.110899_t, internal, 629, 649
-recovered GeneMark_model.110899_t, internal, 675, 707
-recovered GeneMark_model.110899_t, internal, 735, 857
-recovered GeneMark_model.110899_t, internal, 996, 1033

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1042
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support