-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_325

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61705-T1
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 1253, 1378
Sorry, prediction GeneMark_model.107317_t fails validation.
(CGT)	 AG	1253-1378	GT	TAG
(GTG)	 AG	1752-1853	GT	AGG
(CTG)	 AG	1939-2277	GT	AGG
(GTG)	 AG	2309-3325	GT	AGG
(GTT)	 AG	3447-3638	GT	AGG
(GTA)	 AG	3765-4277	GT	AGG
(GAC)	 AG	4360-4527	AG	AAA
-recovered GeneMark_model.107317_t, terminal, 4360, 4527
-recovered GeneMark_model.107317_t, internal, 1253, 1378
-recovered GeneMark_model.107317_t, internal, 1752, 1853
-recovered GeneMark_model.107317_t, internal, 1939, 2277
-recovered GeneMark_model.107317_t, internal, 2309, 3325
-recovered GeneMark_model.107317_t, internal, 3447, 3638
-recovered GeneMark_model.107317_t, internal, 3765, 4277
Couldn't classify 6745, 6876
Sorry, prediction GlimmerHMM_glimmerT_61706-T1 fails validation.
(ATG)	 CA	5698-5898	GT	AGG
(GAT)	 AG	6745-6876	GT	AAG
-recovered GlimmerHMM_glimmerT_61706-T1, initial, 5698, 5898
-recovered GlimmerHMM_glimmerT_61706-T1, internal, 6745, 6876
Valid prediction for Augustus_model.g41018.t1
Valid prediction for snap_scaffold_325-snap.1-T1
Sorry, intron length (6) is less than minimum required (10)
Couldn't classify 7970, 8022
Sorry, prediction GeneMark_model.107318_t fails validation.
(ATG)	 AG	5788-5898	GT	AGG
(GAT)	 AG	6745-6876	GT	AAG
(TAT)	 AG	7970-8022	GT	GCG
-recovered GeneMark_model.107318_t, initial, 5788, 5898
-recovered GeneMark_model.107318_t, internal, 5788, 5898
-recovered GeneMark_model.107318_t, internal, 6745, 6876
-recovered GeneMark_model.107318_t, internal, 7970, 8022
Couldn't classify 1076, 1139
Sorry, prediction Augustus_model.g41017.t1 fails validation.
(AGT)	 AG	1076-1139	GT	AGG
(CGT)	 AG	1253-1371	GT	AGG
(CCT)	 AG	1733-1853	GT	AGG
(CTG)	 AG	1939-2277	GT	AGG
(CTG)	 AG	2408-3325	GT	AGG
(GTT)	 AG	3447-3656	GT	AGG
(GTA)	 AG	3765-4277	GT	AGG
(GAC)	 AG	4360-4527	AG	AAA
-recovered Augustus_model.g41017.t1, terminal, 4360, 4527
-recovered Augustus_model.g41017.t1, internal, 1076, 1139
-recovered Augustus_model.g41017.t1, internal, 1253, 1371
-recovered Augustus_model.g41017.t1, internal, 1733, 1853
-recovered Augustus_model.g41017.t1, internal, 1939, 2277
-recovered Augustus_model.g41017.t1, internal, 2408, 3325
-recovered Augustus_model.g41017.t1, internal, 3447, 3656
-recovered Augustus_model.g41017.t1, internal, 3765, 4277
Valid prediction for snap_scaffold_325-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61704-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8130
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support