-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3248

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 49, 66
Sorry, prediction GeneMark_model.110898_t fails validation.
(AGA)	 AG	49-66	GT	ACG
(AGG)	 AG	91-114	GT	ACG
(AGG)	 AG	139-150	GT	AGG
(GGA)	 AG	171-176	GT	AGG
(AGG)	 AG	199-240	GT	ACG
(GGC)	 AG	269-314	CA	GAC
-recovered GeneMark_model.110898_t, terminal, 269, 314
-recovered GeneMark_model.110898_t, internal, 49, 66
-recovered GeneMark_model.110898_t, internal, 91, 114
-recovered GeneMark_model.110898_t, internal, 139, 150
-recovered GeneMark_model.110898_t, internal, 171, 176
-recovered GeneMark_model.110898_t, internal, 199, 240

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1043
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support