-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3247

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 228, 470
Sorry, prediction snap_scaffold_3247-snap.1-T1 fails validation.
(GTT)	 AG	228-470	GT	AGG
-recovered snap_scaffold_3247-snap.1-T1, internal, 228, 470
Couldn't classify 446, 470
Sorry, prediction GeneMark_model.110897_t fails validation.
(CCT)	 AG	446-470	GT	AGG
(GGA)	 AG	503-544	GT	ATG
(AGA)	 AG	577-615	GT	CAG
(GGA)	 AG	657-671	GT	GAG
(GGA)	 AG	713-727	GT	GAG
(AGT)	 AG	755-778	GT	AAG
(AAG)	 AG	809-842	GA	GAG
-recovered GeneMark_model.110897_t, terminal, 809, 842
-recovered GeneMark_model.110897_t, internal, 446, 470
-recovered GeneMark_model.110897_t, internal, 503, 544
-recovered GeneMark_model.110897_t, internal, 577, 615
-recovered GeneMark_model.110897_t, internal, 657, 671
-recovered GeneMark_model.110897_t, internal, 713, 727
-recovered GeneMark_model.110897_t, internal, 755, 778

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1043
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support