-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3244

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 16, 250
Couldn't classify 590, 643
Sorry, prediction GeneMark_model.110896_t fails validation.
(TTA)	 AG	16-250	GT	AGG
(GAC)	 AG	590-643	GT	GAG
-recovered GeneMark_model.110896_t, internal, 16, 250
-recovered GeneMark_model.110896_t, internal, 590, 643
Couldn't classify 100, 250
Couldn't classify 590, 670
Sorry, prediction snap_scaffold_3244-snap.1-T1 fails validation.
(TTA)	 AG	100-250	GT	AGG
(GAC)	 AG	590-670	GT	CTG
-recovered snap_scaffold_3244-snap.1-T1, internal, 100, 250
-recovered snap_scaffold_3244-snap.1-T1, internal, 590, 670

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1044
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support