-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_324

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61702-T1
Valid prediction for GlimmerHMM_glimmerT_61700-T1
Valid prediction for snap_scaffold_324-snap.2-T1
Valid prediction for GeneMark_model.107314_t
Valid prediction for GeneMark_model.107315_t
Valid prediction for GeneMark_model.107312_t
Valid prediction for GeneMark_model.107316_t
Valid prediction for GeneMark_model.107311_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41016.t1
add_exon() Sorry, Augustus_model.g41016.t1 249-514-terminal-1 is invalid.
Valid prediction for Augustus_model.g41015.t1
Couldn't classify 249, 510
Sorry, prediction snap_scaffold_324-snap.1-T1 fails validation.
(TGG)	 AG	249-510	GT	AGG
(GTT)	 AG	3890-3967	GT	GAG
(GAG)	 AG	7779-7824	GT	GAG
add_exon() Sorry, snap_scaffold_324-snap.1-T1 249-510-terminal-3 is invalid.
-recovered snap_scaffold_324-snap.1-T1, terminal, 249, 510
-recovered snap_scaffold_324-snap.1-T1, terminal, 7779, 7824
-recovered snap_scaffold_324-snap.1-T1, internal, 249, 510
-recovered snap_scaffold_324-snap.1-T1, internal, 3890, 3967
-recovered snap_scaffold_324-snap.1-T1, internal, 7779, 7824
Valid prediction for GlimmerHMM_glimmerT_61703-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61703-T1 249-514-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_61701-T1
Valid prediction for GeneMark_model.107313_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7882, rend_intergenic: 2338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8130
-exon list size: 52


building trellis

1.9    
3.7    
5.6    
7.4    
9.3    
11.1    
13.0    
14.8    
16.7    
18.5    
20.4    
22.2    
24.1    
25.9    
27.8    
29.6    
31.5    
33.3    
35.2    
37.0    
38.9    
40.7    
42.6    
44.4    
46.3    
48.1    
50.0    
51.9    
53.7    
55.6    
57.4    
59.3    
61.1    
63.0    
64.8    
66.7    
68.5    
70.4    
72.2    
74.1    
75.9    
77.8    
79.6    
81.5    
83.3    
85.2    
87.0    
88.9    
90.7    
92.6    
94.4    
96.3    
98.1    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 7882, rend_intergenic: 2338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support