-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3239

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 188, 193
Couldn't classify 545, 677
Sorry, prediction GeneMark_model.110894_t fails validation.
(AGA)	 AG	188-193	GT	TGG
(CAG)	 AG	214-231	GT	CAG
(ATC)	 AG	252-263	GT	CAG
(AGC)	 AG	284-319	GT	CAG
(AGT)	 AG	344-367	GT	CAG
(ATC)	 AG	388-399	GT	CAG
(AGA)	 AG	436-495	GT	AAG
(AAA)	 AG	545-677	GT	GAG
-recovered GeneMark_model.110894_t, internal, 188, 193
-recovered GeneMark_model.110894_t, internal, 214, 231
-recovered GeneMark_model.110894_t, internal, 252, 263
-recovered GeneMark_model.110894_t, internal, 284, 319
-recovered GeneMark_model.110894_t, internal, 344, 367
-recovered GeneMark_model.110894_t, internal, 388, 399
-recovered GeneMark_model.110894_t, internal, 436, 495
-recovered GeneMark_model.110894_t, internal, 545, 677

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1045
-exon list size: 18


building trellis

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25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support