-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3236

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 401, 451
Couldn't classify 934, 954
Sorry, prediction GeneMark_model.110891_t fails validation.
(GTC)	 AG	401-451	GT	AGG
(GTC)	 AG	478-495	GT	AGG
(AGG)	 AG	520-540	GT	GGG
(GTC)	 AG	566-622	GT	AGG
(GTG)	 AG	673-678	GT	AGG
(AGG)	 AG	703-735	GT	AGG
(GGG)	 AG	759-791	GT	AGG
(AGG)	 AG	816-854	GT	AGG
(GTG)	 AG	905-910	GT	AGG
(GGG)	 AG	934-954	GT	AGG
-recovered GeneMark_model.110891_t, internal, 401, 451
-recovered GeneMark_model.110891_t, internal, 478, 495
-recovered GeneMark_model.110891_t, internal, 520, 540
-recovered GeneMark_model.110891_t, internal, 566, 622
-recovered GeneMark_model.110891_t, internal, 673, 678
-recovered GeneMark_model.110891_t, internal, 703, 735
-recovered GeneMark_model.110891_t, internal, 759, 791
-recovered GeneMark_model.110891_t, internal, 816, 854
-recovered GeneMark_model.110891_t, internal, 905, 910
-recovered GeneMark_model.110891_t, internal, 934, 954
Couldn't classify 329, 596
Sorry, prediction snap_scaffold_3236-snap.1-T1 fails validation.
(CCT)	 AG	329-596	GT	AGG
-recovered snap_scaffold_3236-snap.1-T1, internal, 329, 596

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1046
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support