-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3235

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g42296.t1
add_exon() Sorry, Augustus_model.g42296.t1 461-581-terminal-1 is invalid.
Couldn't classify 461, 536
Couldn't classify 1006, 1025
Sorry, prediction GeneMark_model.110890_t fails validation.
(GAG)	 AG	461-536	GT	AGG
(GAA)	 AG	606-614	GT	GAG
(AGA)	 AG	636-647	GT	GAG
(GGT)	 AG	668-694	GT	GGG
(TGG)	 AG	729-752	GT	GAG
(GGA)	 AG	775-804	GT	GAG
(GGA)	 AG	827-932	GT	AAG
(GGG)	 AG	1006-1025	GT	AAG
-recovered GeneMark_model.110890_t, internal, 461, 536
-recovered GeneMark_model.110890_t, internal, 606, 614
-recovered GeneMark_model.110890_t, internal, 636, 647
-recovered GeneMark_model.110890_t, internal, 668, 694
-recovered GeneMark_model.110890_t, internal, 729, 752
-recovered GeneMark_model.110890_t, internal, 775, 804
-recovered GeneMark_model.110890_t, internal, 827, 932
-recovered GeneMark_model.110890_t, internal, 1006, 1025

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1046
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support